Journal article
A framework physical map for peach, a model Rosaceae species
Tree genetics & genomes, Vol.4(4), pp.745-756
10/2008
Handle:
https://hdl.handle.net/2376/109477
Abstract
A genome-wide framework physical map of peach was constructed using high-information content fingerprinting (HICF) and FPC software. The resulting HICF assembly contained 2,138 contigs composed of 15,655 clones (4.3× peach genome equivalents) from two complementary bacterial artificial chromosome libraries. The total physical length of all contigs is estimated at 303 Mb or 104.5% of the peach genome. The framework physical map is anchored on the Prunus genetic reference map and integrated with the peach transcriptome map. The physical length of anchored contigs is estimated at 45.0 Mb or 15.5% of the genome. Altogether, 2,636 markers, i.e., genetic markers, peach unigene expressed sequence tags, and gene-specific and overgo probes, were incorporated into the physical framework and supported the accuracy of contig assembly.
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Details
- Title
- A framework physical map for peach, a model Rosaceae species
- Creators
- T Zhebentyayeva - Department of Genetics and Biochemistry Clemson University Clemson SC 29634-0318 USAG Swire-Clark - Department of Horticulture Clemson University Clemson SC 29634-0319 USAL Georgi - Department of Genetics and Biochemistry Clemson University Clemson SC 29634-0318 USAL Garay - Department of Genetics and Biochemistry Clemson University Clemson SC 29634-0318 USAS Jung - Department of Horticulture and Landscape Architecture Washington State University Pullman WA 99164-6414 USAS Forrest - Department of Genetics and Biochemistry Clemson University Clemson SC 29634-0318 USAA Blenda - Department of Genetics and Biochemistry Clemson University Clemson SC 29634-0318 USAB Blackmon - Clemson University Genomics Institute Clemson University Clemson SC 29634 USAJ Mook - Agricultural Research Programs Virginia State University P.O. Box 9061 Petersburg VA 23806 USAR Horn - Abt Pflanzengenetik, Institut für Biowissenschaften Universität Rostock Albert-Einstein-Str 3 Rostock 18051 GermanyW Howad - Centre de Recerca en Agrigenòmica CSIC–IRTA–UAB Carretera de Cabrils Km 2, 08348, Cabrils Barcelona SpainP Arús - Centre de Recerca en Agrigenòmica CSIC–IRTA–UAB Carretera de Cabrils Km 2, 08348, Cabrils Barcelona SpainD Main - Department of Horticulture and Landscape Architecture Washington State University Pullman WA 99164-6414 USAJ Tomkins - Clemson University Genomics Institute Clemson University Clemson SC 29634 USAB Sosinski - Department of Horticultural Sciences North Carolina State University Raleigh NC 2769-8619 USAW Baird - Department of Horticulture Clemson University Clemson SC 29634-0319 USAG Reighard - Department of Horticulture Clemson University Clemson SC 29634-0319 USAA Abbott - Department of Genetics and Biochemistry Clemson University Clemson SC 29634-0318 USA
- Publication Details
- Tree genetics & genomes, Vol.4(4), pp.745-756
- Academic Unit
- Horticulture, Department of
- Publisher
- Springer-Verlag; Berlin/Heidelberg
- Identifiers
- 99900547035701842
- Language
- English
- Resource Type
- Journal article