Journal article
An Integrated Physical and Genetic Map of the Rice Genome
The Plant cell, Vol.14(3), pp.537-545
03/2002
Handle:
https://hdl.handle.net/2376/110902
PMCID: PMC150577
PMID: 11910002
Abstract
Rice was chosen as a model organism for genome sequencing because of its economic importance, small genome size, and syntenic relationship with other cereal species. We have constructed a bacterial artificial chromosome fingerprint–based physical map of the rice genome to facilitate the whole-genome sequencing of rice. Most of the rice genome (∼90.6%) was anchored genetically by overgo hybridization, DNA gel blot hybridization, and in silico anchoring. Genome sequencing data also were integrated into the rice physical map. Comparison of the genetic and physical maps reveals that recombination is suppressed severely in centromeric regions as well as on the short arms of chromosomes 4 and 10. This integrated high-resolution physical map of the rice genome will greatly facilitate whole-genome sequencing by helping to identify a minimum tiling path of clones to sequence. Furthermore, the physical map will aid map-based cloning of agronomically important genes and will provide an important tool for the comparative analysis of grass genomes.
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Details
- Title
- An Integrated Physical and Genetic Map of the Rice Genome
- Creators
- Mingsheng Chen - Clemson University Genomics Institute, 100 Jordan Hall, Clemson, South Carolina 29634-5727Gernot Presting - Clemson University Genomics Institute, 100 Jordan Hall, Clemson, South Carolina 29634-5727W. Brad Barbazuk - Monsanto Company, 800 North Lindbergh Boulevard, St. Louis, Missouri 63167Jose Luis Goicoechea - Clemson University Genomics Institute, 100 Jordan Hall, Clemson, South Carolina 29634-5727Barbara Blackmon - Clemson University Genomics Institute, 100 Jordan Hall, Clemson, South Carolina 29634-5727Guangchen Fang - Clemson University Genomics Institute, 100 Jordan Hall, Clemson, South Carolina 29634-5727Hyeran Kim - Clemson University Genomics Institute, 100 Jordan Hall, Clemson, South Carolina 29634-5727David Frisch - Clemson University Genomics Institute, 100 Jordan Hall, Clemson, South Carolina 29634-5727Yeisoo Yu - Clemson University Genomics Institute, 100 Jordan Hall, Clemson, South Carolina 29634-5727Shouhong Sun - Clemson University Genomics Institute, 100 Jordan Hall, Clemson, South Carolina 29634-5727Stephanie Higingbottom - Clemson University Genomics Institute, 100 Jordan Hall, Clemson, South Carolina 29634-5727John Phimphilai - Clemson University Genomics Institute, 100 Jordan Hall, Clemson, South Carolina 29634-5727Dao Phimphilai - Clemson University Genomics Institute, 100 Jordan Hall, Clemson, South Carolina 29634-5727Scheen Thurmond - Clemson University Genomics Institute, 100 Jordan Hall, Clemson, South Carolina 29634-5727Brian Gaudette - Clemson University Genomics Institute, 100 Jordan Hall, Clemson, South Carolina 29634-5727Ping Li - Monsanto Company, 800 North Lindbergh Boulevard, St. Louis, Missouri 63167Jingdong Liu - Monsanto Company, 800 North Lindbergh Boulevard, St. Louis, Missouri 63167Jamie Hatfield - Clemson University Genomics Institute, 100 Jordan Hall, Clemson, South Carolina 29634-5727Dorrie Main - Clemson University Genomics Institute, 100 Jordan Hall, Clemson, South Carolina 29634-5727Kasey Farrar - Clemson University Genomics Institute, 100 Jordan Hall, Clemson, South Carolina 29634-5727Caroline Henderson - Clemson University Genomics Institute, 100 Jordan Hall, Clemson, South Carolina 29634-5727Laura Barnett - Clemson University Genomics Institute, 100 Jordan Hall, Clemson, South Carolina 29634-5727Ravi Costa - Clemson University Genomics Institute, 100 Jordan Hall, Clemson, South Carolina 29634-5727Brian Williams - Clemson University Genomics Institute, 100 Jordan Hall, Clemson, South Carolina 29634-5727Suzanne Walser - Clemson University Genomics Institute, 100 Jordan Hall, Clemson, South Carolina 29634-5727Michael Atkins - Clemson University Genomics Institute, 100 Jordan Hall, Clemson, South Carolina 29634-5727Caroline Hall - John Innes Centre Plant Science Research, Department of Brassica and Oilseeds Research, Norwich Research Park, Norwich NR4 7UH, Norfolk, United KingdomMuhammad A Budiman - Clemson University Genomics Institute, 100 Jordan Hall, Clemson, South Carolina 29634-5727Jeffery P Tomkins - Clemson University Genomics Institute, 100 Jordan Hall, Clemson, South Carolina 29634-5727Meizhong Luo - Clemson University Genomics Institute, 100 Jordan Hall, Clemson, South Carolina 29634-5727Ian Bancroft - John Innes Centre Plant Science Research, Department of Brassica and Oilseeds Research, Norwich Research Park, Norwich NR4 7UH, Norfolk, United KingdomJerome Salse - University of Perpignan, Centre National de la Recherche Scientifique Unité Mixte de Recherche 5096, Laboratoire Genome et Development Plantes, F-66860 Perpignan, FranceFarid Regad - Cirad, Amis, Biotrop, F-34398 Montpellier, FranceTrilochan Mohapatra - Indian Initiative on Rice Genome Sequencing, National Research Centre Plant Biotechnology, Indian Agricultural Research Institute, New Delhi 110112, IndiaNagendra K Singh - Indian Initiative on Rice Genome Sequencing, National Research Centre Plant Biotechnology, Indian Agricultural Research Institute, New Delhi 110112, IndiaAkhilesh K Tyagi - Indian Initiative on Rice Genome Sequencing, University of Delhi South Campus, New Delhi 110021, IndiaCarol Soderlund - Clemson University Genomics Institute, 100 Jordan Hall, Clemson, South Carolina 29634-5727Ralph A Dean - Clemson University Genomics Institute, 100 Jordan Hall, Clemson, South Carolina 29634-5727Rod A Wing - Clemson University Genomics Institute, 100 Jordan Hall, Clemson, South Carolina 29634-5727
- Publication Details
- The Plant cell, Vol.14(3), pp.537-545
- Academic Unit
- Horticulture, Department of
- Publisher
- American Society of Plant Biologists
- Identifiers
- 99900547268201842
- Language
- English
- Resource Type
- Journal article