Journal article
GDR (Genome Database for Rosaceae): integrated web-database for Rosaceae genomics and genetics data
Nucleic acids research, Vol.36(suppl_1), pp.D1034-D1040
01/2008
Handle:
https://hdl.handle.net/2376/105080
PMCID: PMC2238863
PMID: 17932055
Abstract
The Genome Database for Rosaceae (GDR) is a central repository of curated and integrated genetics and genomics data of Rosaceae, an economically important family which includes apple, cherry, peach, pear, raspberry, rose and strawberry. GDR contains annotated databases of all publicly available Rosaceae ESTs, the genetically anchored peach physical map, Rosaceae genetic maps and comprehensively annotated markers and traits. The ESTs are assembled to produce unigene sets of each genus and the entire Rosaceae. Other annotations include putative function, microsatellites, open reading frames, single nucleotide polymorphisms, gene ontology terms and anchored map position where applicable. Most of the published Rosaceae genetic maps can be viewed and compared through CMap, the comparative map viewer. The peach physical map can be viewed using WebFPC/WebChrom, and also through our integrated GDR map viewer, which serves as a portal to the combined genetic, transcriptome and physical mapping information. ESTs, BACs, markers and traits can be queried by various categories and the search result sites are linked to the mapping visualization tools. GDR also provides online analysis tools such as a batch BLAST/FASTA server for the GDR datasets, a sequence assembly server and microsatellite and primer detection tools. GDR is available at http://www.rosaceae.org.
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Details
- Title
- GDR (Genome Database for Rosaceae): integrated web-database for Rosaceae genomics and genetics data
- Creators
- Sook Jung - 1Department of Horticulture and Landscape Architecture, Washington State University, Pullman, WA 99164-6414 and 2Department of Genetics and Biochemistry, Clemson University, Clemson, SC 29634, USAMargaret Staton - 1Department of Horticulture and Landscape Architecture, Washington State University, Pullman, WA 99164-6414 and 2Department of Genetics and Biochemistry, Clemson University, Clemson, SC 29634, USATaein Lee - 1Department of Horticulture and Landscape Architecture, Washington State University, Pullman, WA 99164-6414 and 2Department of Genetics and Biochemistry, Clemson University, Clemson, SC 29634, USAAnna Blenda - 1Department of Horticulture and Landscape Architecture, Washington State University, Pullman, WA 99164-6414 and 2Department of Genetics and Biochemistry, Clemson University, Clemson, SC 29634, USARandall Svancara - 1Department of Horticulture and Landscape Architecture, Washington State University, Pullman, WA 99164-6414 and 2Department of Genetics and Biochemistry, Clemson University, Clemson, SC 29634, USAAlbert Abbott - 1Department of Horticulture and Landscape Architecture, Washington State University, Pullman, WA 99164-6414 and 2Department of Genetics and Biochemistry, Clemson University, Clemson, SC 29634, USADorrie Main - 1Department of Horticulture and Landscape Architecture, Washington State University, Pullman, WA 99164-6414 and 2Department of Genetics and Biochemistry, Clemson University, Clemson, SC 29634, USA
- Publication Details
- Nucleic acids research, Vol.36(suppl_1), pp.D1034-D1040
- Academic Unit
- Horticulture, Department of
- Publisher
- Oxford University Press
- Identifiers
- 99900546743701842
- Language
- English
- Resource Type
- Journal article