Journal article
Microsatellite marker polymorphism and mapping in pea (Pisum sativum L.)
Theoretical and applied genetics, Vol.111(6), pp.1022-1031
2005
Handle:
https://hdl.handle.net/2376/109801
PMID: 16133320
Abstract
This paper aims at providing reliable and cost effective genotyping conditions, level of polymorphism in a range of genotypes and map position of newly developed microsatellite markers in order to promote broad application of these markers as a common set for genetic studies in pea. Optimal PCR conditions were determined for 340 microsatellite markers based on amplification in eight genotypes. Levels of polymorphism were determined for 309 of these markers. Compared to data obtained for other species, levels of polymorphism detected in a panel of eight genotypes were high with a mean number of 3.8 alleles per polymorphic locus and an average PIC value of 0.62, indicating that pea represents a rather polymorphic autogamous species. One of our main objectives was to locate a maximum number of microsatellite markers on the pea genetic map. Data obtained from three different crosses were used to build a composite genetic map of 1,430 cM (Haldane) comprising 239 microsatellite markers. These include 216 anonymous SSRs developed from enriched genomic libraries and 13 SSRs located in genes. The markers are quite evenly distributed throughout the seven linkage groups of the map, with 85% of intervals between the adjacent SSR markers being smaller than 10 cM. There was a good conservation of marker order and linkage group assignment across the three populations. In conclusion,we hope this report will promote wide application of these markers and will allow information obtained by different laboratories worldwide in diverse fields of pea genetics, such as QTL mapping studies and genetic resource surveys, to be easily aligned.
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Details
- Title
- Microsatellite marker polymorphism and mapping in pea (Pisum sativum L.)
- Creators
- Karine Loridon - UMR 0102 - Unité de Recherche Génétique et Ecophysiologie des LégumineusesK McPhee - USDA-ARS : Agricultural Research ServiceJ Morin - Domaine expérimental de BrunehautPierre Dubreuil - UMR 0102 - Unité de Recherche Génétique et Ecophysiologie des LégumineusesMarie-Laure Pilet-Nayel - Amélioration des Plantes et Biotechnologies VégétalesGregoire Aubert - UMR 0102 - Unité de Recherche Génétique et Ecophysiologie des LégumineusesCatherine Rameau - Unité de recherche Génétique et amélioration des plantesAlain Baranger - Amélioration des Plantes et Biotechnologies VégétalesClarice CoyneIsabelle Lejeune-Henaut - Domaine expérimental de BrunehautJudith Burstin - UMR 0102 - Unité de Recherche Génétique et Ecophysiologie des Légumineuses
- Publication Details
- Theoretical and applied genetics, Vol.111(6), pp.1022-1031
- Academic Unit
- Crop and Soil Sciences, Department of
- Publisher
- Springer Verlag
- Identifiers
- 99900547248401842
- Language
- English
- Resource Type
- Journal article