Journal article
The Genome Database for Rosaceae (GDR): year 10 update
Nucleic acids research, Vol.42(Database issue), pp.D1237-D1244
01/01/2014
Handle:
https://hdl.handle.net/2376/109633
PMCID: PMC3965003
PMID: 24225320
Abstract
The Genome Database for Rosaceae (GDR,
http:/www.rosaceae.org
), the long-standing central repository and data mining resource for Rosaceae research, has been enhanced with new genomic, genetic and breeding data, and improved functionality. Whole genome sequences of apple, peach and strawberry are available to browse or download with a range of annotations, including gene model predictions, aligned transcripts, repetitive elements, polymorphisms, mapped genetic markers, mapped NCBI Rosaceae genes, gene homologs and association of InterPro protein domains, GO terms and Kyoto Encyclopedia of Genes and Genomes pathway terms. Annotated sequences can be queried using search interfaces and visualized using GBrowse. New expressed sequence tag unigene sets are available for major genera, and Pathway data are available through FragariaCyc, AppleCyc and PeachCyc databases. Synteny among the three sequenced genomes can be viewed using GBrowse_Syn. New markers, genetic maps and extensively curated qualitative/Mendelian and quantitative trait loci are available. Phenotype and genotype data from breeding projects and genetic diversity projects are also included. Improved search pages are available for marker, trait locus, genetic diversity and publication data. New search tools for breeders enable selection comparison and assistance with breeding decision making.
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Details
- Title
- The Genome Database for Rosaceae (GDR): year 10 update
- Creators
- Sook Jung - Department of Horticulture, Washington State University, Pullman, WA 99164-6414, USAStephen P Ficklin - Department of Horticulture, Washington State University, Pullman, WA 99164-6414, USATaein Lee - Department of Horticulture, Washington State University, Pullman, WA 99164-6414, USAChun-Huai Cheng - Department of Horticulture, Washington State University, Pullman, WA 99164-6414, USAAnna Blenda - Department of Horticulture, Washington State University, Pullman, WA 99164-6414, USAPing Zheng - Department of Horticulture, Washington State University, Pullman, WA 99164-6414, USAJing Yu - Department of Horticulture, Washington State University, Pullman, WA 99164-6414, USAAureliano Bombarely - Department of Horticulture, Washington State University, Pullman, WA 99164-6414, USAIlhyung Cho - Department of Horticulture, Washington State University, Pullman, WA 99164-6414, USASushan Ru - Department of Horticulture, Washington State University, Pullman, WA 99164-6414, USAKate Evans - Department of Horticulture, Washington State University, Pullman, WA 99164-6414, USACameron Peace - Department of Horticulture, Washington State University, Pullman, WA 99164-6414, USAAlbert G Abbott - Department of Horticulture, Washington State University, Pullman, WA 99164-6414, USALukas A Mueller - Department of Horticulture, Washington State University, Pullman, WA 99164-6414, USAMercy A Olmstead - Department of Horticulture, Washington State University, Pullman, WA 99164-6414, USADorrie Main - Department of Horticulture, Washington State University, Pullman, WA 99164-6414, USA
- Publication Details
- Nucleic acids research, Vol.42(Database issue), pp.D1237-D1244
- Academic Unit
- WSU Wenatchee Tree Fruit REC; Horticulture, Department of
- Publisher
- Oxford University Press
- Identifiers
- 99900547170701842
- Language
- English
- Resource Type
- Journal article