Comparative DNA sequence analysis of wheat and rice genomes

Me Sorells; M La Rota; Ce Bermudez-Kandianis; Ra Greene; R Kantety; Jd Munkvold; A Miftahudin; A Mahmoud; X Ma; Pj Gustafson; Ll Qi; B Echalier; Bs Gill; Gr Lazo; S Chao; Od Anderson; H Edwards; Am Linkiewicz; J Dubcovsky; Ed Akhunov; J Dvorak; D Zhang; Ht Nguyen; J Peng; Nlv Lapitan; Jl Gonzalez-Hernandez; Ja Anderson; K Hossain; V Kalavacharla; Sf Kianian; Dw Choi; Tj Close; M Dilbirligi; Ks Gill; C Steber; Mk Walker-Simmons; Pe Mcguire; Co Qualset

doi:10.1101/gr.1113003

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Comparative DNA sequence analysis of wheat and rice genomes

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Comparative DNA sequence analysis of wheat and rice genomes

Me Sorells, M La Rota, Ce Bermudez-Kandianis, Ra Greene, R Kantety, Jd Munkvold, A Miftahudin, A Mahmoud, X Ma, Pj Gustafson, …

Genome research, Vol.13(8), pp.1818-1827

eScholarship, University of California

08/01/2003

DOI: https://doi.org/10.1101/gr.1113003

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https://hdl.handle.net/2376/107975

PMCID: PMC403773

PMID: 12902377

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https://doi.org/10.1101/gr.1113003View

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Abstract

food and beverages

Biotechnology

Biological Sciences

Medical and Health Sciences

Genes

Letters

Genetic

Poaceae

Human Genome

Chromosome Mapping

Nucleic Acid

Sequence Homology

Sequence Alignment

Triticum

Plant

Databases

Oryza

Genetics

Sequence Analysis

Genome

Gene Order

Bioinformatics

Expressed Sequence Tags

The use of DNA sequence-based comparative genomics for evolutionary studies and for transferring information from model species to crop species has revolutionized molecular genetics and crop improvement strategies. This study compared 4485 expressed sequence tags (ESTs) that were physically mapped in wheat chromosome bins, to the public rice genome sequence data from 2251 ordered BAC/PAC clones using BLAST. A rice genome view of homologous wheat genome locations based on comparative sequence analysis revealed numerous chromosomal rearrangements that will significantly complicate the use of rice as a model for cross-species transfer of information in nonconserved regions.

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Title: Comparative DNA sequence analysis of wheat and rice genomes
Creators: Me Sorells
M La Rota
Ce Bermudez-Kandianis
Ra Greene
R Kantety
Jd Munkvold
A Miftahudin
A Mahmoud
X Ma
Pj Gustafson
Ll Qi
B Echalier
Bs Gill
Gr Lazo
S Chao
Od Anderson
H Edwards
Am Linkiewicz
J Dubcovsky
Ed Akhunov
J Dvorak
D Zhang
Ht Nguyen
J Peng
Nlv Lapitan
Jl Gonzalez-Hernandez
Ja Anderson
K Hossain
V Kalavacharla
Sf Kianian
Dw Choi
Tj Close
M Dilbirligi
Ks Gill
C Steber
Mk Walker-Simmons
Pe Mcguire
Co Qualset
Publication Details: Genome research, Vol.13(8), pp.1818-1827
Academic Unit: Crop and Soil Sciences, Department of
Publisher: eScholarship, University of California
Identifiers: 99900547011201842
Language: English
Resource Type: Other